Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYNYHLLEDRDVLCIDQKSFFASVSCIEKGLDP-LETKLAVV----ADTKRQGSVILAATPKLKELGIKTGSRLFEIPHRNDIYIINPSMRKYLNVSVAISKIALRYIPPEDLHQYSIDEFFMDVTDSYHRFSSTVHAFCERLKREIYEETGIYCTVGIGSNMLLSKIAMDVEAKHSQNGIAEWRYQDVPTKLWPIQPLRDFWGINRRTEAKLNKRGIFTIGDLAKYPYKFLKKEFGILGVDMHLHANGIDQSK----VREKHKISNPSICKSQILMRDYHFDEAKVVMQELIEDVASRVRARKKVARTIHFAFGYSDEGGVHKQYTLKDPTNLEKDIYKVVMHFADKLCNKQALYRTLSISLSQFINEDERQLSLFEDEYQRKRDECLAKTIDQLHLKYGKGIVSKAVSFTEAGTKHGRLGLMAGHKM |
| 4F50 Chain:A ((3-342)) | -----------VIFVDFDYFFAQV---EEVLNPQYKGKPLVVCVYS-----SGAV-ATANYEARKLGVKAGMPIIKAMQIAPSAIYVP-MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIAD---KSKPNGLGVIRPTEVQDFLNELD-IDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEK---ITGKAKALYLLKLAQNKYSEPVENKSKIPHGRIVTMKRNSRN--LEEIKPYLFRAIEE--SYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F50.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145350 for 2529 contacts (-57.5/contact) +
2D Compatibility (PS) -34467 + (NN) -9525 + (LL) 6428
1D Compatibility (HY) -15600 + (ID) 4500
Total energy: -203014.0 ( -80.27 by residue)
QMean score : 0.380
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