Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLFIPYIMG---NKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVAD-IKEVADGIVIGSEIVKRFKSNTREEIIRYLQSIQQTLNN
1WDW Chain:A ((7-233))
----LIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLY------EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGRE---------------
General information:
TITO was launched using:
RESULT:
Template:
1WDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178286 for 1776 contacts (-100.4/contact) +
2D Compatibility (PS) -24233 + (NN) -12843 + (LL) 2100
1D Compatibility (HY) -12000 + (ID) 3600
Total energy: -228862.0 ( -128.86 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_1WDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WDW-query.scw
PDB file :
Tito_Scwrl_1WDW.pdb
: