Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLIDIQNLTIKNTCEKYLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSCTYDSYQF--DGENI----SRLSQYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKSSKEEALSKIDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHPYTERLIKYRTQLKRDYYD
3C41 Chain:J ((1-220))
LQMIDVHQLK-KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL------NLLEDFDEGEIIIDGINLKAKDTNLNKVR-EEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL--KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3C41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156126 for 1736 contacts (-89.9/contact) +
2D Compatibility (PS) -22570 + (NN) -5046 + (LL) 3088
1D Compatibility (HY) -12000 + (ID) 3300
Total energy: -195954.0 ( -112.88 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3C41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C41-query.scw
PDB file :
Tito_Scwrl_3C41.pdb
: