Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIISISETPNHNTMKITLSESR-EGMTSDTYTK-VDDSQPAFINDILKVEGVKSIFHVMDFISVDKE-NDANWETVLPKVEAVFE
2LTM Chain:A ((11-94))
-MFIQTQDTPNPNSLKFIPGKPVLETR-TMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIM
General information:
TITO was launched using:
RESULT:
Template:
2LTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34203 for 527 contacts (-64.9/contact) +
2D Compatibility (PS) -8888 + (NN) -3038 + (LL) 260
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -50119.0 ( -95.10 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_2LTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LTM-query.scw
PDB file :
Tito_Scwrl_2LTM.pdb
: