Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPVFELKNVNYYYDHKKVLENINIKINKGEFLAIVGPNGAGKSTLLKLILGLLPLQSGEIFVEGIDFKNKKTSIKLSYVSQKANA----FNSGFP--ASVKEVVLSGLTKTKRLFQTFNSKDNEKV-IKVLERLNISDLIHKNIAELSGGQQQRVMIARALISEPAVLVLDEPTNGIDAKHVSEFYNTLDQLKQEGITIILVTHDIGVVADTATEVACLNKHLHF-HGTTDEFKSLDEVEISKIYGHPVRFVDHQHNRECCN
4YMV Chain:J ((15-222))
-----------------EVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNI--NKVRQKVGMVFQHFNL-FPHLTAIENITLAPV-KVKKM----NKKEAEELAVDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEE------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119105 for 1541 contacts (-77.3/contact) +
2D Compatibility (PS) -21294 + (NN) -6802 + (LL) 3524
1D Compatibility (HY) -19600 + (ID) 3800
Total energy: -167077.0 ( -108.42 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: