Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
3GA8 Chain:A ((53-69))
---------DAFMAQVKAFRASVNAE--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1701 for 59 contacts (28.8/contact) +
2D Compatibility (PS) -1912 + (NN) -1861 + (LL) 3292
1D Compatibility (HY) -1600 + (ID) 150
Total energy: -530.0 ( -8.98 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_3GA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GA8-query.scw
PDB file :
Tito_Scwrl_3GA8.pdb
: