Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKELATFLKVLSDSSRLEILDLLSCGELCACDLLAHFQFSQPTLSYHLKALVKTNLVTTRKIGNKHLYQL-NHNI---FESVINNLSKVHTSNQRCFCHNLKTGEC
1SMT Chain:A ((34-120))
---QSLAEFFAVLADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNALDHLQE------------------
General information:
TITO was launched using:
RESULT:
Template:
1SMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64823 for 487 contacts (-133.1/contact) +
2D Compatibility (PS) -8834 + (NN) -3305 + (LL) 1240
1D Compatibility (HY) -8000 + (ID) 1550
Total energy: -85272.0 ( -175.10 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1SMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SMT-query.scw
PDB file :
Tito_Scwrl_1SMT.pdb
: