Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHNLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL
2WVJ Chain:A ((19-190))
-------GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR---------------ALPACLLRDVAQEAL-GVAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEV------IGGADKYHSVCRLCYF-----------
General information:
TITO was launched using:
RESULT:
Template:
2WVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78712 for 1271 contacts (-61.9/contact) +
2D Compatibility (PS) -16982 + (NN) -7876 + (LL) 2280
1D Compatibility (HY) -15600 + (ID) 3250
Total energy: -120140.0 ( -94.52 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_2WVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WVJ-query.scw
PDB file :
Tito_Scwrl_2WVJ.pdb
: