Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLL-FVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVIDRT----LKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAA--GLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
2H4H Chain:A ((9-242))
----------LLNESRLTVTLTGAGISTPSGIPDFRGPN---------------VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELYGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE
General information:
TITO was launched using:
RESULT:
Template:
2H4H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115199 for 1906 contacts (-60.4/contact) +
2D Compatibility (PS) -22746 + (NN) -1560 + (LL) 1128
1D Compatibility (HY) -21600 + (ID) 4550
Total energy: -164527.0 ( -86.32 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_2H4H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4H-query.scw
PDB file :
Tito_Scwrl_2H4H.pdb
: