Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGY-NITGVCTSNKIAFLAKELGIKICEINDV-DHIDLAIDGADEV-DPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQY-LGETFKLPVEVDKFNWYHILRKIESYADIK-----VERR---------VNEDVAFITDNGNYILDCKLPKGI-DPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
4NML Chain:A ((26-249))
------------------------VGLGTGTTAKFVVERIGQRMQEGSLKDLLCVPTSEATRKQAESLGIPLTTLDGIADCLDVAIDGADEILPPTLGLVKGRGGALLREKMIAAAAKTFIVAADETKLVSNGIGSTGALPVEVVVFSGSHTKRLLSALPSVKRHGGRAEFRKRAGAAQEDIREEDRFVTDNGNYIVDLYFTETVPDLHEMDKELKSIPGVVETGFFLDLASVCLIGKADG------
General information:
TITO was launched using:
RESULT:
Template:
4NML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130129 for 1589 contacts (-81.9/contact) +
2D Compatibility (PS) -21847 + (NN) -7549 + (LL) 2692
1D Compatibility (HY) -15600 + (ID) 3950
Total energy: -176383.0 ( -111.00 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_4NML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NML-query.scw
PDB file :
Tito_Scwrl_4NML.pdb
: