Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFNQFENQNFFNGNPSDTFKDLGKQVFNYFSTPSFVTNIYETDELYYLEAELAGVNKEDISIDFNN-NTLTIQATRSAKYKSEQLILDERNFESLMRQFDFEAVDKQHITASFENGLLTITLPKIKPSNETTSSTSIPIS
3VQM Chain:A ((27-113))
-------------------------------------VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIP-----------------
General information:
TITO was launched using:
RESULT:
Template:
3VQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49310 for 505 contacts (-97.6/contact) +
2D Compatibility (PS) -9209 + (NN) 368 + (LL) 1692
1D Compatibility (HY) -7600 + (ID) 1150
Total energy: -65209.0 ( -129.13 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_3VQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VQM-query.scw
PDB file :
Tito_Scwrl_3VQM.pdb
: