Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNIQFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSN-VDLINYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGG-SGSFNYSKTISYNQKNYVTEV-ESQNSKGVKWGVKANSFVT----PNGQVSAYDQY----LFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFITTLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHEVKIKSITPK |
2LKF Chain:A ((2-289)) | -------------GKITP-----VSVKKVDDKVT-------LYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSK-LYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGL--LNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDL-YQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKL------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LKF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42013 for 2182 contacts (-19.3/contact) +
2D Compatibility (PS) -29491 + (NN) -11054 + (LL) 2008
1D Compatibility (HY) -20400 + (ID) 4550
Total energy: -105500.0 ( -48.35 by residue)
QMean score : 0.260
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