Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLEIKDLVYKASDRI-ILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLISPTSGELYFKGKPYND--YDPEELRQRISYLMQQSDLFGE--TIEDNMIFPSLARNDKFDRKRAKQLIKD----VGLGHYQLSSEVENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLVEQDVAIMWITHSDDQSMRHFQKRITIVDGKISKVEELNQHE
4YMV Chain:J ((7-194))
--------VYKNFGSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQHFNLFPHLTAIENITLAP--VKVKKMNKKEAEELAVDLLAKVGLLDKKDQYPIK-LSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTH------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66807 for 1319 contacts (-50.6/contact) +
2D Compatibility (PS) -19688 + (NN) -9701 + (LL) 3252
1D Compatibility (HY) -16400 + (ID) 3400
Total energy: -112744.0 ( -85.48 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: