Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKS--ITCKSIIGLNPERLGVTGEIIFDGTSMLSLSESQRKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEHGTRESVLHHPEHVYTKYLLSTKKKINDHFKHVMRGDVHD |
3C4J Chain:A ((39-260)) | -------------------VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE-----GEIIIDGIN-LKAKDTNLNKVR-EEVGMVFQRFN-LFPHMTVLNNITLAPMKVR-KWPREKAEAKAMELLDKVGLKDKAH---AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLS------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C4J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99065 for 1745 contacts (-56.8/contact) +
2D Compatibility (PS) -23581 + (NN) -9678 + (LL) 3636
1D Compatibility (HY) -18000 + (ID) 3900
Total energy: -150588.0 ( -86.30 by residue)
QMean score : 0.529
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