Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAEKWYDANFDQDLINERARAKDICFELNHTKPSDTNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFYHRNEGYEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDLPSETLNDETIK
2P2O Chain:A ((3-182))
-SEKEKMLAGHLYNPA-DLELVKERERARRLVRLYNETLETEYDKRTGLLKELFGSTGERLFIEPNFRCDYGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKDVPANAVVGGNPAKVIK-----------------
General information:
TITO was launched using:
RESULT:
Template:
2P2O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102148 for 1416 contacts (-72.1/contact) +
2D Compatibility (PS) -20158 + (NN) -12635 + (LL) 984
1D Compatibility (HY) -16800 + (ID) 3850
Total energy: -154607.0 ( -109.19 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_2P2O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P2O-query.scw
PDB file :
Tito_Scwrl_2P2O.pdb
: