Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MHPRKTLQLPLILKIILN------------LALIGIVIIVLTHTEFQLNAGDSN------VFLLNWDIRGLTSYIF------SFLILVALVSKLILIFITRRQRTS---
1V9V Chain:A ((1-114))
GSSGSSGPKATAQMEGRLQEFLTAYAPGARLALADGVLGFIHHQIVELARDCLAKSGENLVTSRYFLEMQEKLERLLQDAHERSDSEEVSFIVQLVRKLLIIISRPARSGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1V9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75496 for 528 contacts (-143.0/contact) +
2D Compatibility (PS) -8314 + (NN) -3415 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -90825.0 ( -172.02 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_1V9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9V-query.scw
PDB file :
Tito_Scwrl_1V9V.pdb
: