Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAG----RSDYFWDLFIQMPAALMFPSGNKFYDW----IYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETWDFAHCLPYFKKLEKT--YGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEA----GYHKTPDVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMK-RKNLTVETRAFVTEIHYEGRRATGVTYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFEDHLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYPNLMFHFLPI-AVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGE-----ISPGP------EVQTDEEILD-WVRRDGETALHPSCSAKMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRKPLEPQYIDYYKHGVHDENEGAIEVKPYAK |
| 4UDR Chain:A ((6-527)) | -------FDYVIVGGGTAGSVLANRLSARPENRVLLIEAGIDTPENNIPPEIHDGLRPWLPRLSGDKFF-WPNLTIHRAAEHPGITREPQFYEQGRLLGGGSSVNMVVSNRGLPRDYDEW-QALGADGWDWQGVLPYFIKTERDADYGD---DPLHGNAGPIPIGRVDSRH--WSDFTVAATQALEAAGLPNIHDQNARFDDGYFPPAFTLKGEERFSAARGYLDASVRVRPNLSLWTESRVLKLLTTGNAITGVSVLRGRETLQVQAREVILTAGALQSPAILLRTGIGPAADLHALGIPVLADRPGVGRNLWEHSSIGVVAPLTEQARADAS-----------------TGKAGSRHQLG---IRASSGVDPATPSDLFLHIGADPVSGLASAV---FWVN----KPSSTGWLKLKDADPFSYPDVDFNLLSDPRDLGRLKAGLRLITHYFAAPSLAKYGLALALSRFAAPQPGGPLLNDLLQDEAALERYLRTNVGGVWAASGTARIGRADDSQAVVDK-AGRVYGVTGLRVADASIMPTVPTANTNLPTLMLAEKIADAI--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UDR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93123 for 4573 contacts (-20.4/contact) +
2D Compatibility (PS) -52828 + (NN) -19346 + (LL) 3564
1D Compatibility (HY) -25200 + (ID) 8700
Total energy: -195633.0 ( -42.78 by residue)
QMean score : 0.420
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