Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIV-ITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLDVLTSG---PIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPP--VNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
3VX3 Chain:A ((16-193))
--------------------------------------EGVKRIIPVVSGKGGVGKSLVSTTLALVLAEKGYRVGLLDLDFHGASDHVILGFEPKE--------FPEEDRGVVPPTVHGIKFMTIAYYT-TPLRGKE-ISDALIELLTITRWDELDYLVIDMPPGLGDQLLDVLRFLK-RGEFLVVATPSKLSLNVVRKLIELLKEEGHKVIGVVEN-------------------
General information:
TITO was launched using:
RESULT:
Template:
3VX3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57685 for 1249 contacts (-46.2/contact) +
2D Compatibility (PS) -17892 + (NN) -9325 + (LL) 3252
1D Compatibility (HY) -14000 + (ID) 2100
Total energy: -97750.0 ( -78.26 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_3VX3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VX3-query.scw
PDB file :
Tito_Scwrl_3VX3.pdb
: