Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MKKKFVSSCIAS---------------TILFGTLLGVTYKAEAATVHVAGGVWSHGIGKHYVWSYYSHNKRNHGSTAVGKYSSFSGVARPGVQSKASAPKAWGGNKTFYSLH
1KVE Chain:? ((19-81))
WSLRWRMQKSTTIAAIAGCSGAATFGGLAGGIVGCIAAGILAILQGFEVNWHNGGGGDRSNPV-------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KVE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12586 for 168 contacts (-74.9/contact) +
2D Compatibility (PS) -4137 + (NN) 305 + (LL) 1708
1D Compatibility (HY) 400 + (ID) 450
Total energy: -14760.0 ( -87.86 by residue)
QMean score : -0.150
(partial model without unconserved sides chains):
PDB file :
Tito_1KVE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KVE-query.scw
PDB file :
Tito_Scwrl_1KVE.pdb
: