Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGVFIPFPKVPKHQSVPLALHFTEHYARFIPTILSVAIPLIQRDAVGLFQVANASIATTFLTHATKRALNHVTINDQRLGERPYGGNFNMPSGHSSMVGLAVAFLMRRYSVKKYLWLLPLIPLTMLARIYLDMHTIGAVLAGLGTGMLCVGLFTSPKNLN |
| 2LW6 Chain:A ((28-35)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------LYNGRHWG------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LW6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1884 for 20 contacts (-94.2/contact) +
2D Compatibility (PS) -694 + (NN) 1074 + (LL) 13532
1D Compatibility (HY) 400 + (ID) 100
Total energy: 12328.0 ( 616.40 by residue)
QMean score : -0.768
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