Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNTTQKSLLVFMGVFFLIFGVDQAIKHAILEGFHYESLVIDIVLVFNKGVAFSLLSFLEGGLKYLQILLILGLFIFLMRQKELFKSHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHYGFDFAIFNFADVMIDVGVGVLLLRQFFFKQKQNKIKGIITLFK
2SCU Chain:A ((1-119))
SILIDKNTKVICQG-----FTGSQGTFHSEQAIAYGTKMV-------------GGVTPGKGGTTHLGLPVF---------------NTVREAVAATGATASVIY--------VPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPN
General information:
TITO was launched using:
RESULT:
Template:
2SCU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111990 for 928 contacts (-120.7/contact) +
2D Compatibility (PS) -12574 + (NN) 1243 + (LL) 4172
1D Compatibility (HY) 2000 + (ID) 1000
Total energy: -118149.0 ( -127.32 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_2SCU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2SCU-query.scw
PDB file :
Tito_Scwrl_2SCU.pdb
: