Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIKMKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKARRSPQFSKR
4DR4 Chain:I ((2-128))
-EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGL-VRAVAALEPLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
4DR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30400 for 938 contacts (-32.4/contact) +
2D Compatibility (PS) -13484 + (NN) -4157 + (LL) 312
1D Compatibility (HY) -7200 + (ID) 3000
Total energy: -57929.0 ( -61.76 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_4DR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR4-query.scw
PDB file :
Tito_Scwrl_4DR4.pdb
: