Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYFLVVFLFLFVGCMKKDFTLKDLSLPQEASSYLASSQNSSHNNQSIDPQALRENLKESYLKAWYSPWLDAKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDELIKNMDIERYPSTKIKAVVVRNNDVRAVPTNKPYYLSPKGYPFDRFQNSLVFPGTPVLITPFNPDKTYPPLQSSFVYGWIKVSELAYMRDKEIELLTKLKNYDMPIKEKNPLYTDYGEFYPHAKIGELFPLIPQIQNASQIPPKKELKAYGFLKDAKGYAALQSVFLDEKDFFVFPKAFTSEIMAYFINTMLGQKYGWGGLL-GNRDCSAFTRDSFAN-FGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYIIKNATPFGTLIYL-----KGHIMLYLGERNHQAIVAHSIWSVQTQKHFK--TLSHKIGGVVITSLWLAEEHNGAFSKKKLLIDRVLGMSDLKDFVHKTSSPLNAN |
| 2K1G Chain:A ((40-163)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTFREQFGLELPRSTYEQQEMG-KSVSRSNLRTGD--------------LVLFRAGSTGRHVGIYIGN--NQFVHASTSSGVIISSMNEPYWKKRYNEARRVLSRSLE------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2K1G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -59651 for 855 contacts (-69.8/contact) +
2D Compatibility (PS) -11846 + (NN) 1296 + (LL) 20396
1D Compatibility (HY) -2800 + (ID) 1350
Total energy: -53955.0 ( -63.11 by residue)
QMean score : 0.276
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