Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQG-----GAKQKIIELLENVD----ATEID-----VLKIRSKQIREL--IFGTPFPSDLRDEIFQAYEILSQQY------------------------------HMKEA-DVAVRSSATAEDLPDASFAGQ-QDTYLNIKG-------KTELIHYIKSCLASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSA---GVMFSIDTETGFKD--AVFITSAWGLGENVVGGTINPDEFYVFKPTLEQNKRPIIKRQ--LGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDIEWAKDGESGEIFIVQARPETVQSQKTKEENQVFEKFKFKNPNE-KKEIILQGRAIGSKIGSGKVRII-NDLEHMNSFKEGEILVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSG------------ATDSLYTGMEITVSCAEGEEGYVYAGIYEHEIERVELSNMQET---------QTKIYINIGNPEKAFSFSQLPNHGVGLARMEMIIL---NQIKAHPLALVDLHHKKSVKEKNEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMR------------MLGGSSYEP--------NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNM------KVMIPFLRTIEE-GKKVL---EILRKNNLESGKN-GLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGVDRD-----------SELVSH----VFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKLEKELKDHGLTAR |
| 1VBH Chain:A ((15-861)) | --------EGNKTMKELLGGKGANLAEM----ASIGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVEEYMGATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEKLEHMKESKGLKNDTDLTASDLKE--LVGQYKEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITGLR-GTAVNVQCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNA-----------RTPEDLDAMKNLMPQAYDELVENCNILESHYKEM-----------QDIEFTVQENRLWMLQCRTGKRTGKSAVKIAVDMVNEG--------------------LVEPR-SAIKMVEPGHLDQLLHP-QFENPSAYKDQVIATGLPASPGAAVGQVVFTAEDAEAWHSQGKAAILVRAETSPEDVGGMHAAVGILTE---MTSHAAVVARGWGKCCVSGCSGIRVNDAEKLVTIGGHVLREGEWLSLNGSTGE---VILG--KQPLSPPALSGDLGTFMAWVDDVRKLKVLANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKA----VRQMIMAPTLELRQQALDRLLPYQR-SDF------EGI---FRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAETGANQEDALARIEKLSEVNPMLGFRGCR--LGISYPELT--EMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADEIAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVYLAQGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHGGE-PSSVAFFAKAGLDYVSCSPFRVPIARLAAAQVLV---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VBH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -126647 for 5511 contacts (-23.0/contact) +
2D Compatibility (PS) -75161 + (NN) -24290 + (LL) 5544
1D Compatibility (HY) -28800 + (ID) 10500
Total energy: -259854.0 ( -47.15 by residue)
QMean score : 0.308
|
|
|