Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLLVNDECIACDA--CREECPSEAIEEGDPIYSIDPDRCTECYGYDDDEPRCVSVCPVDAILPDPNNAESKEELKYKYEILKEQD
2FD2 Chain:A ((1-67))
-AFVVTDNCIKCKYTDCVEVCPVDAFYEGPNFLVIHPDECIDC-------ALCEPECPAQAIFSEDEVPEDMQEFIQLNAELAEVW
General information:
TITO was launched using:
RESULT:
Template:
2FD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41739 for 426 contacts (-98.0/contact) +
2D Compatibility (PS) -6875 + (NN) -7520 + (LL) 96
1D Compatibility (HY) -6400 + (ID) 1200
Total energy: -63638.0 ( -149.38 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_2FD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FD2-query.scw
PDB file :
Tito_Scwrl_2FD2.pdb
: