Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKVADIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTILCDIAQLHCHNLPRVPIDILLGGPPCQSYSTLGKRK--MDEKANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDYGVPQVRERVILVGALKSFK-QKFYFPKPIKTHFSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVRNSKELSEHSSPKNNEKLIKIMQTLKDGQSKDDLPESLRPKSGYINTYAKMWWEKPAPTITRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSANAKRLQIGNAVPPLLSAALAHAVFDFLRGKNV |
| 10MH Chain:A ((13-306)) | --RFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEKPE--GDITQVNEKTIP--DHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLL-----------------LPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGERIY--STRGIAITLSAYGGGIFAK-----TGGYLVNGKTRKLHP--------RECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNFKPY |
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General information:
TITO was launched using:
| RESULT:
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Template: 10MH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80325 for 2226 contacts (-36.1/contact) +
2D Compatibility (PS) -30429 + (NN) -5270 + (LL) 1568
1D Compatibility (HY) -14000 + (ID) 4650
Total energy: -133106.0 ( -59.80 by residue)
QMean score : 0.365
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