Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKRAKTKAQQIKELLLKHYPNQTTEL---RHKNPYELLVATILSAQCTDARVNQITP---KLFEKYPSVNDLALASLEEVKEIIQSVSYSNNKSKHLISMGAKVVKDFKGVIPSTQKELMSLDGVGQKTANVVLSVCFDANYIAVDTHVFRTTHRLGL-----SNANTPIKTEEELSDLFK-DNLSKLHHALILFGRYTCKAKNPLCDACFLKEFCVSKASFKA
4YPH Chain:A ((12-217))
--------PAREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQ---TRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGY-YSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA
General information:
TITO was launched using:
RESULT:
Template:
4YPH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112370 for 1500 contacts (-74.9/contact) +
2D Compatibility (PS) -20226 + (NN) -8044 + (LL) 784
1D Compatibility (HY) -13600 + (ID) 2550
Total energy: -156006.0 ( -104.00 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_4YPH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YPH-query.scw
PDB file :
Tito_Scwrl_4YPH.pdb
: