Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKILKRPCHITLYSDSQYVCQAINVWLVNWQKKNF-----AKVKNVDLWKEFVKVSKGHSIVAVWIKGHNGHAENERCNSLAKLEAQKRVKTTT
1RBV Chain:A ((2-141))
LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADAKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDT
General information:
TITO was launched using:
RESULT:
Template:
1RBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51271 for 1070 contacts (-47.9/contact) +
2D Compatibility (PS) -14523 + (NN) -7511 + (LL) 0
1D Compatibility (HY) -8400 + (ID) 3700
Total energy: -85405.0 ( -79.82 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1RBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RBV-query.scw
PDB file :
Tito_Scwrl_1RBV.pdb
: