Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRSLAFCLLALLGLQVLGA---RDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKALSAEDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEKTKGLSAEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK
4K0E Chain:A ((522-583))
-RTAIGIAVATLVGVMILGATIGRDFLPYLDEGSIWLQVTLPPGISLEKAGQMADNLRAATMEFPEVEHVVTQVGRNDEGTDPFSPSHIETAVTLHPYSTWTSGRDKQQLIEAMATRFRDLPGTQVGFSQPMIDGVLDKLAGA
General information:
TITO was launched using:
RESULT:
Template:
4K0E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3332 for 213 contacts (-15.6/contact) +
2D Compatibility (PS) -6235 + (NN) -3792 + (LL) 208
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -18001.0 ( -84.51 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_4K0E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K0E-query.scw
PDB file :
Tito_Scwrl_4K0E.pdb
: