Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNFFKKIVNKIKGEEVKEKKRESVPKEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNVQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIAHTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ
2Q9C Chain:A ((63-303))
-----------------------------------------DLKEAVKEKLVGMLEPDERRATLRKL-----GFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLED-----
General information:
TITO was launched using:
RESULT:
Template:
2Q9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154611 for 1972 contacts (-78.4/contact) +
2D Compatibility (PS) -25904 + (NN) -12010 + (LL) 4552
1D Compatibility (HY) -18400 + (ID) 5300
Total energy: -211673.0 ( -107.34 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_2Q9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q9C-query.scw
PDB file :
Tito_Scwrl_2Q9C.pdb
: