Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFLVKKIGV-------VIMILVC---FLACSQESFIKMQ-KKAQEQENDGSKRPSY---------VDSDYEVFSETIFLQNMVYQPIEERNAFFQLTKDED------------NSFNPENSVILLNEPSDNSEKNLLSYPN--------DPNNNEDNANNSQKNPFLYK------PKRKTKNPKLIEYSQQDFYPLKNGDIIMS-KEGDQWLIEIQSKALKRFLKDQNDKDRQIQTFTFNDTKTQIAQIK-----GKISSYV--YTTNNGSLSL------RPFYESFLL-------------------EKKSDNVYTIENKALDTMEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKS------DTELFLECLKES-------- |
| 1SQ9 Chain:A ((3-395)) | KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-------GLIATGFNNGTVQISELSTLRPLYNFESQHNNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG----DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SQ9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16761 for 1980 contacts (8.5/contact) +
2D Compatibility (PS) -29636 + (NN) 2427 + (LL) 384
1D Compatibility (HY) -10400 + (ID) 2950
Total energy: -23414.0 ( -11.83 by residue)
QMean score : 0.187
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