Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCITAQNTQGVHGVYPLSVESVKAQILAIRDDFSIKAFKMGALCNAQIIECVANALETC--DFGLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQARDDKSASKAMGVLRDLG----VKNAVIKGGHTEHFQGEFSNDWVFL-EDAEFILSAKRF-NTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIIIQNPLNIG--------HGHGPLNLWSIKKHV |
| 3RM5 Chain:A ((23-291)) | ----PTVLSIAGTDPSGGAGIEADVKTITAHRCYAMTCITALNAQTPVKVYSINNTPKEVVFQTLESNLKDMKCNVIKTGML-TAAAIEVLHEKLLQLGENRPKLVVDPVL---------GKDIVSLITEKVAPFADILTPNIPECYKLLG-EERKVNGLQDIFQIAKDLAKITKCSNILVKGGH-----EKYITDVLFLGAEQKFIIFKGNFVNTTHTHGTGCTLASAIASNLARGYSLPQSVYGGIEY----VQNAVAIGCDVTKETVKDNGPINHVYAVEIP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RM5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -154942 for 2018 contacts (-76.8/contact) +
2D Compatibility (PS) -25827 + (NN) -7151 + (LL) 2712
1D Compatibility (HY) -19200 + (ID) 4150
Total energy: -208558.0 ( -103.35 by residue)
QMean score : 0.535
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