Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKISCLLLVISLFGGFLNASSLYEKLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELG-VKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIRDIKGLKAANTLSSTYGEIAFKYDAQIVSVDSM--------AQALLLVAQKRADLTLNSSLAILNYLNTHKNSPFKIAWESKEKDGGASFVINKHQEKALELINQAMRRLINKGVLKRLGEQFFGKDVSQP
4EQ9 Chain:A ((7-235))
-----------------------------KKEIIVATNGSPRPFIYEEN-GELTGYEIEVVRAIFKDSDKYDVKFEKTEWSGVFAGLDADRYNMAVNNLSY-TKERAEKYLYAAPIAQNPNVLVVKKDDSSIKSLDDIGGKSTEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGDTYLPA
General information:
TITO was launched using:
RESULT:
Template:
4EQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80389 for 1677 contacts (-47.9/contact) +
2D Compatibility (PS) -24184 + (NN) -11857 + (LL) 2624
1D Compatibility (HY) -12800 + (ID) 2700
Total energy: -129306.0 ( -77.11 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_4EQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EQ9-query.scw
PDB file :
Tito_Scwrl_4EQ9.pdb
: