Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKCEKRVFDSLPSTQTYLLEKLKSNKLKAPVLVLAKNQSAGIGSRGNIWEIVESALTFSLALNASDLPKDLPMQASALYLGFL-FKEVLKELGSQTWLKWPNDLYLGDQKIGGVMVNVYKGMRVCGIGVNRVSTKWACLDIGASDDWIIESFLKKIEENLFWGEVLSKYALEFHRSNSFNFHNDWGEAVSLKDAELLEDGRICIKGKIYDRM
2DKG Chain:A ((16-131))
--------FQEITSTNEFA----KTSYLEEGTVIVADKQTMGHGRLNRKWESPEGGLWLSIVLSPKVPQKDLP---KIVFLGAVGVVETLKEFSIDGRIKWPNDVLVNYKKIAGVLVEGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRL
General information:
TITO was launched using:
RESULT:
Template:
2DKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51719 for 817 contacts (-63.3/contact) +
2D Compatibility (PS) -12832 + (NN) -10213 + (LL) 1844
1D Compatibility (HY) -8000 + (ID) 2000
Total energy: -82920.0 ( -101.49 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_2DKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DKG-query.scw
PDB file :
Tito_Scwrl_2DKG.pdb
: