Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRRWFLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIELTYQNPMFWHVGRVENEGLKTLLLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSALYNKVAL |
| 3THX Chain:A ((26-98)) | -------------------------------------------------------------------------MPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMN-----FESFVKDLLLVRQYRVEVYKNRASKENDWYLAYKASPGNLSQF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3THX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8087 for 461 contacts (-17.5/contact) +
2D Compatibility (PS) -7679 + (NN) -2771 + (LL) 5712
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -18975.0 ( -41.16 by residue)
QMean score : 0.272
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