Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------MHDFLKAFKDAFPHTISIFLGYLLMGMTFGMLLAQQGYDYKVALFMSLFIYAGAIQFVAITLLSAQASLMNVVIVSLLVNARQTCYALSMLDRFKNTKWRLPYLAHALT--DETFALLNLYAPKKGVNETDFMFSISLLNHSYWIFGSLVGSLV--GSHFSFDTQGMEFVMTAIFIVLFMEQYKRNTNHKNAWLGIAIAVVCLALFGTEYFLLIALVLMVLALILFRKQLEC
3LGI Chain:B ((4-231))
LNPLSTPQFDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDG--RVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPY----NLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETP-EGIGFAIP------------FQLATKIMDKLIRDGRVIR
General information:
TITO was launched using:
RESULT:
Template:
3LGI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -221544 for 1676 contacts (-132.2/contact) +
2D Compatibility (PS) -21356 + (NN) 6691 + (LL) 1916
1D Compatibility (HY) 6400 + (ID) 1250
Total energy: -229143.0 ( -136.72 by residue)
QMean score : 0.116
(partial model without unconserved sides chains):
PDB file :
Tito_3LGI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LGI-query.scw
PDB file :
Tito_Scwrl_3LGI.pdb
: