Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKKITHQIKALSELVALEHTIFSSMFLLMAMVISSYQKNQTLFFGLETLILCFLALLGARNFAMGFNRLVDRDIDKDNPRTKNRPSVDGRISVKGMVIFSVSNALLFVGVSYFINPLAFKLSLPFLIILGGYSYFKRFSSLAHFVVGLALGLAPIAGSVAVLGD-----------IPLWNVFLALGVMLWVAGFDLLYSLQDMEFDKERGLFSIPSQLGEKWCLNLSRLSHLVALICWLCFVKCYHGGLFAYLGLGVSALILLYEQILVARDYKNIPKAFFVSNGYLGVVFFIFIVLDVGFKHA
4OD5 Chain:B ((21-267))
-------------RLVRIEHTIFSLPFAYVGALLSRYP------FTLADAILMAAAVVGLRMAGMAYNNIADLDIDRLNPRTAKRPLVVGAVSLREAWALVAAGSAIYFASAALLNTYALLLSPLVLAIALTYPHAKRLHPLPHLHLGIVLGSVVFGGAVAASGDEASSLGEVLRSVP-W-LYVA-AVSLWVAGFDTIYSIMDIDFDRSHGLGSIPALLGPKGALAASLAMHAAAVALFIAGVEAYGLGAIATVSTALTALVIILVQAMAWLGRVKESFNLNLAVPIIIGAGIIVD---------
General information:
TITO was launched using:
RESULT:
Template:
4OD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -197220 for 1903 contacts (-103.6/contact) +
2D Compatibility (PS) -24995 + (NN) -16056 + (LL) 2728
1D Compatibility (HY) -16400 + (ID) 4350
Total energy: -256293.0 ( -134.68 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_4OD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OD5-query.scw
PDB file :
Tito_Scwrl_4OD5.pdb
: