Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNKIKKGLLVF
1YF2 Chain:A ((178-203))
---------------------------------------------------LTKIDEGIEIIEKSINKLERIKKGLMHK
General information:
TITO was launched using:
RESULT:
Template:
1YF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1612 for 94 contacts (17.1/contact) +
2D Compatibility (PS) -2936 + (NN) -3213 + (LL) 4112
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -4175.0 ( -44.41 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1YF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YF2-query.scw
PDB file :
Tito_Scwrl_1YF2.pdb
: