Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LATGIGTAKMILCGEHAVVYGEPAISV-----------PFTQAVVTTNVET-SIKTKFSSAFF----SGDLDDMP--DFLAGIKALVVDVLNEIGNG------------------ECVSIHVVSGVPIGRGLGSSAAVATSIARGLYKYFNQ---------------ELDSKKLLAIVNAAEKIAHGNASGVDAITVVSEKPVWYERDRKLEIMHFPKKITFVVADTGVPSETRDAVKDVQVLYKENQVEIGKIIHQLGDISREIKTHL-EGDADTVK-----IGAAMNKAQSYLETLTVSDSSLEKLIKVARSNGADGAKLTGGGRGGCIIAVAKNQEIAEQITKALHNAGAAQEWIFTIGEGSYESDSHRTHECGAN |
| 2R42 Chain:A ((13-332)) | --------KVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGF-----QLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLP-ALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAAHGLH-SKLT-------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2R42.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82113 for 1755 contacts (-46.8/contact) +
2D Compatibility (PS) -27050 + (NN) -7837 + (LL) 3300
1D Compatibility (HY) -14800 + (ID) 3750
Total energy: -132250.0 ( -75.36 by residue)
QMean score : 0.460
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