Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGQLKGLPVEDGFRMPGEYEPHIGCFMIWPERPDNWRLGGKPAQQNYKEVAVAISNFEPVTMFVSPNQYKNARKELPDTIRVIEMSNDDAWIRDYGPSFLVDDKGDMRGVDWGFNAWGGLLDGLYFPWDKDNQIAKKVCELERIDYYSQKDFILEGCSIHVDGEGTLVTTEECLLSEGRNPNLTKIEIEQTLKKYF--HAQKVIWLKHGFYLDETNGHVDNIFNFVAPGEVVLSWTDNKSDPQYEISRECYDILANKTDAKGRTFIIHKLHCPDPVLITQTESEGVEAINGTFPRQAGDRLAASYVNYYTANGAIIFPLFDDPK--DKDAQELLEKLYPDRKIVGIKAREIL--LGGGNIHCITQHLPDKSTIRE |
| 4YTG Chain:A ((38-319)) | ----------------------------------------KELAKNDKVITIVASESQKNTVIT---QYTQSGVNLSNCDFIIAKT-DSYWTRDYTGWFAMYDTNKVGLVDFIYNR----------PRPNDDEFPKYEAQYLGIEMFGMK-LKQTGGNYMTDGYGSAVQSH---IAYTENSSLSQAQVNQKMKDYLGITHHDVVQDPNGEYIN----HVDCWGKYLAPNKILIRKVPD-NHPQHQALEDMAAYFAAQTCAWGTKYEVYR------ALATNEQ---------------------PYTNSLILNNRVFVPV-NGPASVDNDALNVYKTAMPGYEIIGVKGASGTPWLGTDALHARTHEVADK----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4YTG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -66055 for 2158 contacts (-30.6/contact) +
2D Compatibility (PS) -29705 + (NN) -12468 + (LL) 3004
1D Compatibility (HY) -10400 + (ID) 3400
Total energy: -119024.0 ( -55.15 by residue)
QMean score : 0.391
|
|
|