Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDWDFNNPESMKAWDLASGSYAEQVSG
2NUD Chain:C ((11-19))
-GDWDENNPS------------------
General information:
TITO was launched using:
RESULT:
Template:
2NUD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 480 for 19 contacts (25.3/contact) +
2D Compatibility (PS) -1085 + (NN) -3009 + (LL) 1220
1D Compatibility (HY) 0 + (ID) 300
Total energy: -2694.0 ( -141.79 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_2NUD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NUD-query.scw
PDB file :
Tito_Scwrl_2NUD.pdb
: