Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYIKGRLIFFFVVLVIALCSVLILLIIKISVWKDEPFHLSDAKEIECLGSCEIKNTNQKIHFFSIKENLFEEKGDIAGILNEDEQKVADKSIFIVILDDEKGIANEE
2KNC Chain:B ((699-717))
----------SVMGAILLIGLAALLIWKL------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8475 for 68 contacts (-124.6/contact) +
2D Compatibility (PS) -1934 + (NN) -1825 + (LL) 6444
1D Compatibility (HY) -2400 + (ID) 350
Total energy: -8540.0 ( -125.59 by residue)
QMean score : 0.973
(partial model without unconserved sides chains):
PDB file :
Tito_2KNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KNC-query.scw
PDB file :
Tito_Scwrl_2KNC.pdb
: