Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKIYLNELVFYGYHGVLKEETKLGQTFRVSLILGLSTKKAGISDSVEDTVSYADVYETVKEIVEGKPFKLIEALAEKIASEVLTGYPLLEEVTVKLIKPNPPIPGHYDSVAVEIERKRSDLNG
2NM3 Chain:A ((3-119))
-DTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRE------
General information:
TITO was launched using:
RESULT:
Template:
2NM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70764 for 827 contacts (-85.6/contact) +
2D Compatibility (PS) -13046 + (NN) -8567 + (LL) 96
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -106681.0 ( -129.00 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_2NM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NM3-query.scw
PDB file :
Tito_Scwrl_2NM3.pdb
: