Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
4M5M Chain:A ((4-138))
MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4M5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101365 for 1023 contacts (-99.1/contact) +
2D Compatibility (PS) -14275 + (NN) -5384 + (LL) 1792
1D Compatibility (HY) -11200 + (ID) 2850
Total energy: -133282.0 ( -130.29 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_4M5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5M-query.scw
PDB file :
Tito_Scwrl_4M5M.pdb
: