Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNVFEPRLSSWLENAGD---------DDDVVLSSRIRLARNLKDEQFPI--------YEQKEEIVDNIAEVFDDNF--------ILIKMNQISLLQKALLV---EKHLISPYMMNKSEYG-AVLLNEEENVSIMLNEEDHLRIQCMTPGLRLFDALEAALQIDGYVEEKLSYAFDKEFGYLTSCVTNIGTGMRASVMVHLPGLVTTKRIKSVIEAIRSLGFVVRGIYGEGSMPASNIFQVSNQVTLGKTEAEIVEDLTQVMEQIIMQERVARTTLKQKFHIALEDRVFRSYGLLMNCRIISMKEAADAISDIRFGVELGFFEHISRQKMNELVLFSQPAFLRREAGRDMDELEEKVIRAKVIREILGDK |
2J1Q Chain:A ((93-355)) | ---FKPSDKQPPKDSGDLNTFIDVDPDKKYVISTRVRCGRSL--EGYPFNPCLKKQQYEEMESRVKGQLESMSGELRGKYYPLTGMTKETQKQLIDDHFLFKEGDRFLQAAHACKFWPTGRGIYHNDAKTFLVWVNEEDHLRIISMQKGGNLKEVFGRLVTAVGVIEEKVKFSRDDRLGFLTFCPTNLGTTIRASVHIKLP-----R--KKLEEVAAKYNLQVR-----------GVYDISNKRRLGLSEYEAVKEMQDGILELIKAEES--------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J1Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -110920 for 1624 contacts (-68.3/contact) +
2D Compatibility (PS) -23279 + (NN) -5146 + (LL) 9948
1D Compatibility (HY) -11600 + (ID) 3400
Total energy: -144397.0 ( -88.91 by residue)
QMean score : 0.436
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