Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADNRCSKVIVVCQEEERKHVKELMSQLNVAEHRIEIVKGGSERQYSVAAGLERCGTGRVVLVHDGARPFITLDIIDRLLIGVEQSKAAIC-AVKVKDTVKRV-MNGVVQETVDRENLWQVQTPQAFELPILRKAHQLARKEQFLGTDEASLVERIPCPVAIVQGSYYNIKLTTPEDMPLAKAILGELGGIAND
2XWM Chain:A ((2-218))
-ATVAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDE-----SKLVFGGEDSVIVSGGVDRTESVALALEAAGDAEFVLVHDAARALTPPALIARVVAALKEGHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAY--ARATAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVL---------
General information:
TITO was launched using:
RESULT:
Template:
2XWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137270 for 1776 contacts (-77.3/contact) +
2D Compatibility (PS) -23230 + (NN) -6943 + (LL) 1204
1D Compatibility (HY) -12400 + (ID) 4000
Total energy: -182639.0 ( -102.84 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_2XWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XWM-query.scw
PDB file :
Tito_Scwrl_2XWM.pdb
: