Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYQDALKQIDANKVYTAEEAVELAKKIDFAKFDATVEVAFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVEKINQGWFDFDVIVATPDMMGEVG-KLGRVLGPKGLMPNPKTGTVTMDVTKAVNEIKAGKVEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTFGPGIKVDPASL
3TG8 Chain:A ((15-228))
--------------VDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIK-GRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS-
General information:
TITO was launched using:
RESULT:
Template:
3TG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104297 for 1712 contacts (-60.9/contact) +
2D Compatibility (PS) -23525 + (NN) -15711 + (LL) 1396
1D Compatibility (HY) -18000 + (ID) 5850
Total energy: -165987.0 ( -96.96 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_3TG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TG8-query.scw
PDB file :
Tito_Scwrl_3TG8.pdb
: