Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHA-IWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS
4KNV Chain:A ((105-235))
---------------------------------LAEDVKAMLTELR----KEVRLLLLTNGDRQTQREKIEACACQSYFDAVVVGGEQ----REEKPAPSIFYYCCNLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKNGI------VPLKSSP--VPHYMVSSVLELPALLQSI--
General information:
TITO was launched using:
RESULT:
Template:
4KNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32166 for 934 contacts (-34.4/contact) +
2D Compatibility (PS) -13764 + (NN) -10658 + (LL) 3008
1D Compatibility (HY) -9200 + (ID) 1950
Total energy: -64730.0 ( -69.30 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_4KNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KNV-query.scw
PDB file :
Tito_Scwrl_4KNV.pdb
: