Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VFIHGFQEEVGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEKVIEKSVEQAGTAE-LAAEM---REVQVRLQQSELLMREQFYPRVGLTERD-FSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYAD-IGKMYEGARSSE-PFYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV
3RM5 Chain:A ((346-546))
-------------WDSYINHEFVKKVADGTLERKKFQFFIEQDYAYLVDYARVHCIAGSKAPCLEDMEKELVIVGGVRTEMGQHEKRLKEVF----GVKDPDYFQKIKRGPALRAYSRYFNDVSRRGNWQELVASLTPCLMGYGEALTKMKGKVTAPEGSVYHEWCETYASSWYREAMDEGEKLLNHILETYPPEQLDTLVTIYAEVCELETNFWTAA-------------
General information:
TITO was launched using:
RESULT:
Template:
3RM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96359 for 1404 contacts (-68.6/contact) +
2D Compatibility (PS) -20986 + (NN) -10624 + (LL) 1932
1D Compatibility (HY) -10400 + (ID) 2450
Total energy: -138887.0 ( -98.92 by residue)
QMean score : 0.694
(partial model without unconserved sides chains):
PDB file :
Tito_3RM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RM5-query.scw
PDB file :
Tito_Scwrl_3RM5.pdb
: