Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLA-ARRVEKLEKIVQTIKANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIRTVTIYPAAINTELLETITDKETEQGMTSLY--KQYGITPDRIASIVAYAIDQPEDVNVNEFTVGPTSQPW
2UVD Chain:A ((2-231))
--LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASR--NITVNAIAPGFIATDMTDVL-DENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSK----------------
General information:
TITO was launched using:
RESULT:
Template:
2UVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134989 for 1965 contacts (-68.7/contact) +
2D Compatibility (PS) -24632 + (NN) -7796 + (LL) 668
1D Compatibility (HY) -10800 + (ID) 3900
Total energy: -181449.0 ( -92.34 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_2UVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UVD-query.scw
PDB file :
Tito_Scwrl_2UVD.pdb
: